[Cod-bugs] Need help to deposit data : one error in the CIF file

Antanas Vaitkus antanas.vaitkus90 at gmail.com
Wed Mar 28 16:41:08 EEST 2018


Dear Nicolas Massoni,

Saulius' comments are correct, however, there seems to be an additional
problem on our side that prevents the "Edit"->"Save" approach from working.

We will try to issue a bug-fix as soon as possible and will inform You once
it is done.

Sincerely,
Antanas Vaitkus

2018-03-28 16:33 GMT+03:00 Saulius Gražulis <grazulis at ibt.lt>:

> On 2018-03-28 16:05, MASSONI Nicolas wrote:
> >
> >
> > I am trying to deposit an already published data in 2016
> > (https://doi.org/10.1107/S2056989016014225). Attached is the uploaded
> > CIF file. But the system finds the following warning : “unallowed symbol
> > in CIF comment”. Please I need some assistance to skip this warning to
> > complete the deposition process. Thanks
>
> Dear Nicolas,
>
> thank you very much for depositing your data to COD!
>
> The file you have attached is fine at the moment and no longer contains
> special symbols (our deposition pipeline has filtered them away). The
> workaround in the COD deposition web site for the message you quote
> would be to click on "Edit" button, and them immediately click on
> "Save". I realise that this is an inconvenience and we'll see if we can
> fix the Web site so that this message no longer precludes deposition.
>
> There is one more nuance in the file you have provided: author names
> should not be written in one line ('Massoni, Nicolas and Pierrick,
> Chevreux') but as two separate strings in a loop:
>
> > loop_
> > _publ_author_name
> > 'Massoni, Nicolas'
> > 'Pierrick, Chevreux'
>
> I also suggest adding DOI – this will make us easier to track back the
> publications. Please find an updated file with these changes attached.
> The file should be accepted by the COD deposition system.
>
> Sincerely yours,
> Saulius
>
> --
> Dr. Saulius Gražulis
> Vilnius University Institute of Biotechnology, Saulėtekio al. 7
> LT-10257 Vilnius, Lietuva (Lithuania)
> fax: (+370-5)-2234367 / phone (office): (+370-5)-2234353
> mobile: (+370-684)-49802, (+370-614)-36366
>
> _______________________________________________
> Cod-bugs mailing list
> Cod-bugs at lists.crystallography.net
> http://lists.crystallography.net/cgi-bin/mailman/listinfo/cod-bugs
>
>


-- 
Antanas Vaitkus,
PhD student at Vilnius University Institute of Biotechnology,
room V325, Saulėtekio al. 7,
LT-10257 Vilnius, Lithuania
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