[Cod-bugs] special characters (0x1b, 0x07) in CIF files

Antanas Vaitkus antanas.vaitkus90 at gmail.com
Wed Dec 11 07:08:49 EET 2019

Dear Marcin Wojdyr,

currently, the naming conventions of multi-block hkl files are a little
inconsistent in the COD. However, I do agree that we should at least avoid
duplicate data names. We will fix this issue as soon as possible.

As for hkl entry 4115482, it seems to contain a CIF syntax error that our
parser did not properly detect. We will definitely investigate that.

Antanas Vaitkus

On Tue, 10 Dec 2019 at 22:46, Marcin Wojdyr <wojdyr at gmail.com> wrote:

> and four hkl file with different syntax problems:
> $ time find ../cod/hkl/ -name \*.hkl | xargs -n1000 ./build/gemmi validate
> ../cod/hkl/2/00/88/2008821.hkl: duplicate block name: 2008821_Fobs
> ../cod/hkl/4/11/54/4115482.hkl:27:0(860): parse error
> ../cod/hkl/4/11/75/4117532.hkl: duplicate block name:
> 4117532_diffractogram_1
> ../cod/hkl/4/11/75/4117533.hkl: duplicate block name:
> 4117532_diffractogram_1
> real 2m27.263s
> user 1m41.871s
> sys 0m6.641s
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Antanas Vaitkus,
PhD student at Vilnius University Institute of Biotechnology,
room V325, SaulÄ—tekio al. 7,
LT-10257 Vilnius, Lithuania

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