From philipp.hans at unitn.it Mon Feb 17 16:12:18 2020 From: philipp.hans at unitn.it (Philipp Hans) Date: Mon, 17 Feb 2020 15:12:18 +0100 Subject: [Cod-bugs] svn does not work Message-ID: Good day! I want to install the cod on my computer via |svn co svn://www.crystallography.net/cod| but at some point I should enter a password in the following way "philipp at saulius-grazulis.lt's password:" The directory cod is bigger than 80 GB and has > 10^6 items I am using ubuntu 19.10. svn, version 1.10.6 (r1863367) ?? compiled Jul 31 2019, 11:01:38 on x86_64-pc-linux-gnu The same happens while trying to update, Example for output: ====================================================================== Fetching external item into 'branches/tcod/cif-dictionaries/cif_cod': External at revision 215267. Fetching external item into 'tags/v0.1.0/cod/lib/cod-tools': External at revision 6240. Fetching external item into 'branches/andrius-deposition-in-background/lib/cod-tools': External at revision 6957. philipp at saulius-grazulis.lt's password: ^C svn: warning: W205011: Error handling externals definition for 'branches/andrius-validation-Makefile/validation-template': svn: warning: W170013: Unable to connect to a repository at URL 'svn+ssh://saulius-grazulis.lt/home/andrius/svn-repositories/CIF-validation-Makefile/trunk' svn: E200015: Caught signal ====================================================================== Thanks for your answer, Phil _________________ Philipp Hans, PhD . co-chair of the ECA general interest group GIG01 "Young crystallographers" https://ecanews.org/groups/gig-01-young-crystallographers/ . co-organizer of the Vienna young Science Symposium - vss.tuwien.ac.at The sent information can be confidential. Do not distribute without permission. -- This message has been scanned for viruses and dangerous content by MailScanner, and is believed to be clean. -------------- next part -------------- An HTML attachment was scrubbed... URL: From grazulis at ibt.lt Mon Feb 17 16:12:18 2020 From: grazulis at ibt.lt (=?UTF-8?Q?Saulius_Gra=c5=beulis?=) Date: Mon, 17 Feb 2020 16:12:18 +0200 Subject: [Cod-bugs] svn does not work In-Reply-To: References: Message-ID: <54fd392e-3d1d-2ad1-52f1-f8a8c795b8ec@ibt.lt> Hi, Philipp, On 2020-02-17 16:12, Philipp Hans wrote: > I want to install the cod on my computer via > > |svn co svn://www.crystallography.net/cod| > > but at some point I should enter a password in the following way > "philipp at saulius-grazulis.lt's password:" It seems that we have a link to the external repository that is not public. For now, as a workaround I can suggest you to check out just the COD data directories: > cd cod > svn up --set-depth exclude branches/ docs/ html/ retracted/ statistics/ tags/ trunk/ vendor/ > svn cleanup this should remove all directories that contain experimental code and leave you with just cif/, hkl/, mysql/ and smi/ directories that contain the actual COD data. The 'svn update' command would then update only the directories that you have checked out, and leave out the rest. You can always check out additional directories later of you need them. > The directory cod is bigger than 80 GB and has > 10^6 items The 'svn cleanup' should free some of your disk space as well, but yes, COD has grown larger ? 450 thousand records, and that takes some space. If you a short of disk space you can make a sparse Subversion checkout and have just those directories that you need. For example, if you run: cd cod/cif/1 svn up --set-depth empty 00 svn cleanup then the contents of the directory '00/' will be removed from your local working copy. You can restore it later using commands: cd cod/cif/1 svn up --set-depth infinity 00 Please check the "Version control with Subversion" book for details. Hope this helps, Saulius -- Dr. Saulius Gra?ulis Vilnius University Institute of Biotechnology, Saul?tekio al. 7 LT-10257 Vilnius, Lietuva (Lithuania) fax: (+370-5)-2234367 / phone (office): (+370-5)-2234353 mobile: (+370-684)-49802, (+370-614)-36366 -------------- next part -------------- A non-text attachment was scrubbed... Name: grazulis.vcf Type: text/x-vcard Size: 4 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: signature.asc Type: application/pgp-signature Size: 213 bytes Desc: OpenPGP digital signature URL: From sdipietr at fiu.edu Tue Feb 18 21:02:58 2020 From: sdipietr at fiu.edu (Silvina Di Pietro) Date: Tue, 18 Feb 2020 19:02:58 +0000 Subject: [Cod-bugs] COD to PDF Message-ID: Hello Crystallography Open Database, I had a simple question: I am currently using Eva software on my school's XRD lab. Whenever I match, I get specific COD #. I was wondering if this # could be "translated" into PDF from the ICDD database. Is there a way that the same COD # could exist for PDF? In advance, I thank you! -Silvi Silvina A. Di Pietro DOE Fellow, Chemistry Applied Research Center Florida International University 10555 West Flagler St., EC 2101 Miami, Florida 33174 email: sdipietr at fiu.edu | sdipi001 at fiu.edu website: https://fellows.fiu.edu/silvina-di-pietro-chemistry/ -- This message has been scanned for viruses and dangerous content by MailScanner, and is believed to be clean. -------------- next part -------------- An HTML attachment was scrubbed... URL: