[Cod-bugs] Fwd: Cod-bugs post from sakurabayashi26 at sanken.osaka-u.ac.jp requires approval

[Saulius Gražulis]

Dear Dr. Sakurabayashi,

I have inserted the data items form you mail (below) into the on-hold 
COD entry 3000497.

You may want to verify at the 
https://www.crystallography.net/cod/manage_depositions.php Web page 
(after the login) that the changes correspond to you original intended 
antry.

Sincerely yours,
Saulius

On 2024-04-24 09:38, Saulius Gražulis wrote:
> Dear dr. Sakurabayashi,
>
> thank you for your message. I'm very glad that your deposition worked!
>
> On 2024-04-24 04:01, sakurabayashi26 at sanken.osaka-u.ac.jp wrote:
>>
>> Dear Dr. Saulius,
>>
>> Thank you for the reply.
>>
>> >1. please comment out the '_refine_ls_R_factor_gt' and the '_refine_ls_wR_factor_ref' lines 
>> (data >items) in >you submitted file; you can do this in the COD 
>> deposition site editor. Please save these >lines on you >computer in 
>> a separate file;
>>
>> I just deposited the cif file with the two lines above commented out.
>>
>> Deposition seems to have worked.
>>
>> >2. your submission should be then ready for deposition ("green"). Please deposit it and send us:
>>
>> >
>>
>> >   a) the COD ID of the deposited structure;
>>
>> >   b) the saved '_refine_ls_R_factor_gt' and the '_refine_ls_wR_factor_ref' lines (data items;
>>
>> The COD ID is 3000497.
>>
>> Those two lines are shown below;
>>
>> _refine_ls_R_factor_gt             0.2149
>>
>> _refine_ls_wR_factor_ref           0.5835
>>
>> If necessary, please add the below comment as the reason of errors.
>>
>> This is a MicroED structure refined only kinematically.
>>
>> Thus, traditional X-ray crystallography thresholds are not adequate.
>>
> Excellent! I'll insert the values into your structure in the 'on-hold' 
> repository. The values will be there when the structure is released.
>
>> If there are still any deficiencies regarding depositions, I would 
>> appreciate it if you could let me know.
>>
> I'll let you know but for now everything seems OK!
>
> Sincerely yours,
> Saulius
>
>> Best regards,
>>
>> Shuhei Sakurabayashi
>>
>> *From:*Saulius Gražulis grazulis at ibt.lt
>> *Sent:* Tuesday, April 23, 2024 3:04 PM
>> *To:* cod-bugs at lists.crystallography.net; 
>> sakurabayashi26 at sanken.osaka-u.ac.jp
>> *Subject:* Re: [Cod-bugs] Fwd: Cod-bugs post from 
>> sakurabayashi26 at sanken.osaka-u.ac.jp requires approval
>>
>> Dear dr. Sakurabayashi
>>
>> thank you for depositing your data to the COD!
>>
>> Indeed, we should relax Rf requirements for the MicroED structures, 
>> but for now, please proceed as follows:
>>
>> 1. please comment out the '_refine_ls_R_factor_gt' and the 
>> '_refine_ls_wR_factor_ref' lines (data items) in you submitted file; 
>> you can do this in the COD deposition site editor. Please save these 
>> lines on you computer in a separate file;
>>
>> 2. your submission should be then ready for deposition ("green"). 
>> Please deposit it and send us:
>>
>>    a) the COD ID of the deposited structure;
>>
>>    b) the saved '_refine_ls_R_factor_gt' and the 
>> '_refine_ls_wR_factor_ref' lines (data items;
>>
>> We will reinsert them into your deposited file with the appropriate 
>> comment. You should also be able to reinsert them in the COD data 
>> editing Web window if you would like to do so.
>>
>> HTH,
>>
>> Sincerely yours,
>> Saulius
>>
>>
>> -- 
>> This message has been scanned for viruses and
>> dangerous content by *MailScanner* <http://www.mailscanner.info/>, 
>> and is
>> believed to be clean. 
>
>
> -- 
> Dr. Saulius Gražulis
> Vilnius University Institute of Biotechnology, Saulėtekio al. 7
> LT-10257 Vilnius, Lietuva (Lithuania)
> mobile: (+370-684)-49802, (+370-614)-36366
>
> -- 
> This message has been scanned for viruses and
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>
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-- 
Dr. Saulius Gražulis
Vilnius University Institute of Biotechnology, Saulėtekio al. 7
LT-10257 Vilnius, Lietuva (Lithuania)
mobile: (+370-684)-49802, (+370-614)-36366

-- 
This message has been scanned for viruses and
dangerous content by MailScanner, and is
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