[Cod-bugs] crystal structure deposition

Saulius Gražulis grazulis at ibt.lt
Fri Oct 18 09:15:07 EEST 2024


Hi, Paulina,

actually, Antanas already looked in the issue yesterday, and he reported 
that there are already standard data items in the COF CORE dictionary, 
albeit only in the new DDLm dictionary:

>     loop_
>     _audit_support.id
>     _audit_support.funding_organization
>     _audit_support.funding_organization_doi
>     _audit_support.award_type
>     _audit_support.award_number
>     _audit_support.award_recipient
>
>     1 'Engineering and Physical Sciences Research Council'
>     'https://doi.org/10.13039/501100000266'
>     studentship 'EP-M506515-1' 'E. T. Broadhurst'

Sine the matter, as I understand, is urgent, I suggest using these data 
items, which I am 99% sure are the right way to convey the funding 
information.

I suggest that you insert this information into all entries that you 
have deposited and that need the acknowledgement. You can of course use 
only part of the data names (e.g. if the _....funding_organization_doi 
is not known you can skip it or use '?' as a value, and if it is not 
available doe you organisation you can use a lone dot '.' as a value 
(both values should be used without the quotes)).

You can either edit your deposition yourself using the Web interface, or 
send us (me) the info and the COD IDs that need to be updated, and we 
insert the information for you.

We can also make this information prominent on the HTML "card" 
representation of your COD entry, but this requires some coding so will 
take form several weeks to a couple of months. Is this needed/urgent for 
you?

Sincerely yours,
Saulius

On 2024-10-18 07:33, Paulina Dominiak wrote:
> Hello Saulius,
> Thank you for the replay!
> I am happy that something can be done. I would be very grateful for 
> the information how much time you need to investigate this issue. Is 
> it about couple of days or longer?
> Best,
> Paulina
>
> W dniu 17.10.2024 o 20:13, Saulius Gražulis pisze:
>> On 2024-10-17 16:04, Paulina Dominiak wrote:
>>> I've just deposited two structures to the COD (1572876-1572877). 
>>> I've discovered, however, that there is nowhere possible to add 
>>> information about the research project from which these structures 
>>> resulted from. My funding agency is requiring this kind of 
>>> information to be associated with the data. How I can do this?
>>
>> We can create a dedicated CIF data item for that purpose, if such 
>> item does not yet exist.
>>
>> We'll have a look at the CIF dictionaries for such data item and I'll 
>> come back to you with the exact instructions.
>>
>> Regards,
>> Saulius
>>

-- 
Dr. Saulius Gražulis
Vilnius University Institute of Biotechnology, Saulėtekio al. 7
LT-10257 Vilnius, Lietuva (Lithuania)
mobile: (+370-684)-49802, (+370-614)-36366


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