From noro at ees.hokudai.ac.jp Wed Mar 5 02:05:06 2025 From: noro at ees.hokudai.ac.jp (=?UTF-8?B?6YeO5ZGC55yf5LiA6YOO?=) Date: Wed, 5 Mar 2025 09:05:06 +0900 Subject: [Cod-bugs] error during CIF deposition Message-ID: Dear Sir/Madum, I'm Shin-ichiro Noro of Hokkaido University, Japan. I tried to deposit my CIF file, [Cu(CF3SO3)2(bpp)2]_response_250227.cif, to COD for the first time. When the CIF was deposited, the following error occurred. cif-deposit.pl: Can't create session: Unable to connect to a repository at URL 'svn://localhost/cod/cif/3/00/05': Can't connect to host 'localhost': Connection refused Could you tell me how to treat this error? Best regards, Noro ------------------------------------------------------------- ????? ?? ????? ???????????? ???????? ???????? 060-0810 ?????????10??5?? Tel: 011-706-2272 e-mail: noro at ees.hokudai.ac.jp Shin-ichiro Noro (Professor) Group of Environmental Adaptation Science Section of Integrated Environmental Science Faculty of Environmental Earth Science Hokkaido University N10W5, Kita-ku, Sapporo 060-0810, Japan Tel: +81-11-706-2272 e-mail: noro at ees.hokudai.ac.jp ------------------------------------------------------------- -- This message has been scanned for viruses and dangerous content by MailScanner, and is believed to be clean. -------------- next part -------------- An HTML attachment was scrubbed... URL: From grazulis at ibt.lt Wed Mar 5 08:53:56 2025 From: grazulis at ibt.lt (=?UTF-8?Q?Saulius_Gra=C5=BEulis?=) Date: Wed, 5 Mar 2025 08:53:56 +0200 Subject: [Cod-bugs] error during CIF deposition In-Reply-To: References: Message-ID: Dear Dr. Shin-ichiro, thank you for your problem report. I regret that the deposition did? not work. From your report I see that the problem is on our server side; we'll fix it ASAP and let you know how the process proceeds. Sincerely yours, Saulius On 2025-03-05 02:05, ????? wrote: > > I'm Shin-ichiro Noro of Hokkaido University, Japan. > I tried to deposit my CIF file, [Cu(CF3SO3)2(bpp)2]_response_250227.cif, > to COD for the first time. > When the CIF was deposited, the following error occurred. > > cif-deposit.pl : Can't create session: Unable > to connect to a repository at URL > 'svn://localhost/cod/cif/3/00/05': Can't connect to host 'localhost': > Connection refused > > Could you tell me how to treat this error? -- Dr. Saulius Gra?ulis Vilnius University Institute of Biotechnology, Saul?tekio al. 7 LT-10257 Vilnius, Lietuva (Lithuania) mobile: (+370-684)-49802, (+370-614)-36366 -- This message has been scanned for viruses and dangerous content by MailScanner, and is believed to be clean. -------------- next part -------------- An HTML attachment was scrubbed... URL: From antanas.vaitkus90 at gmail.com Thu Mar 6 09:58:17 2025 From: antanas.vaitkus90 at gmail.com (Antanas Vaitkus) Date: Thu, 6 Mar 2025 09:58:17 +0200 Subject: [Cod-bugs] error during CIF deposition In-Reply-To: References: Message-ID: Dear Noro, Saulius asked me to contact you with further instructions on how to continue with your data deposition. Unfortunately, our server was recently a bit overwhelmed by queries from crawler bots which resulted in a temporary unavailability of our deposition service. To resume with the deposition of your previous structure ([Cu(CF3SO3)2(bpp)2]_response_250227.cif), please: 1. Go to https://www.crystallography.net/cod/validate.php?CODSESSION=qovpepn705tjplflngrn3j5n5u 2. Press 'Edit' and recheck/revalidate the structure. 3. Continue normally with the rest of the deposition. Please let us know if you were successful in depositing your structure or if you ran into any additional problems. I apologise once again for any trouble this may have caused. Sincerely, Antanas On Wed, 5 Mar 2025 at 08:51, ????? wrote: > Dear Sir/Madum, > > I'm Shin-ichiro Noro of Hokkaido University, Japan. > I tried to deposit my CIF file, [Cu(CF3SO3)2(bpp)2]_response_250227.cif, > to COD for the first time. > When the CIF was deposited, the following error occurred. > > cif-deposit.pl: Can't create session: Unable to connect to a repository > at URL > 'svn://localhost/cod/cif/3/00/05': Can't connect to host 'localhost': > Connection refused > > Could you tell me how to treat this error? > > Best regards, > > Noro > > ------------------------------------------------------------- > ????? ?? > ????? ???????????? > ???????? ???????? > 060-0810 ?????????10??5?? > Tel: 011-706-2272 > e-mail: noro at ees.hokudai.ac.jp > > Shin-ichiro Noro (Professor) > Group of Environmental Adaptation Science > Section of Integrated Environmental Science > Faculty of Environmental Earth Science > Hokkaido University > N10W5, Kita-ku, Sapporo 060-0810, Japan > Tel: +81-11-706-2272 > e-mail: noro at ees.hokudai.ac.jp > ------------------------------------------------------------- > > -- > This message has been scanned for viruses and > dangerous content by *MailScanner* , and is > believed to be clean. _______________________________________________ > Cod-bugs mailing list > Cod-bugs at lists.crystallography.net > http://lists.crystallography.net/cgi-bin/mailman/listinfo/cod-bugs > -- Antanas Vaitkus, Vilnius University, Life Sciences Center, Institute of Biotechnology, room C521, Saul?tekio al. 7, LT-10257 Vilnius, Lithuania -- This message has been scanned for viruses and dangerous content by MailScanner, and is believed to be clean. -------------- next part -------------- An HTML attachment was scrubbed... URL: From grazulis at ibt.lt Fri Mar 7 08:51:20 2025 From: grazulis at ibt.lt (=?UTF-8?Q?Saulius_Gra=C5=BEulis?=) Date: Fri, 7 Mar 2025 08:51:20 +0200 Subject: [Cod-bugs] error during CIF deposition In-Reply-To: References: Message-ID: <6b029000-c011-4e81-b5b9-5f14cb796e0b@ibt.lt> Dear Noro, great news, I'm very happy it worked! Thanks, Antanas, for taking care of this. Sincerely yours, Saulius On 2025-03-07 02:25, ????? wrote: > Dear Antanas, > > I succeeded in depositing my structure! > Thank you for your kind support. > > Best regards, > > Noro > > ------------------------------------------------------------- > ???????? > ?????????????????? > ????????????????? > 060-0810??????????10??5?? > Tel: 011-706-2272 > e-mail: noro at ees.hokudai.ac.jp > > Shin-ichiro Noro (Professor) > Group of Environmental Adaptation Science > Section of Integrated Environmental Science > Faculty of Environmental Earth Science > Hokkaido University > N10W5, Kita-ku, Sapporo 060-0810, Japan > Tel: +81-11-706-2272 > e-mail: noro at ees.hokudai.ac.jp > ------------------------------------------------------------- > > > 2025?3?6?(?) 16:58 Antanas Vaitkus : > > Dear Noro, > > Saulius asked me to contact you with further instructions on how > to continue > with your data deposition. Unfortunately, our server was recently > a bit overwhelmed > by queries from crawler bots which resulted in a temporary > unavailability of our > deposition service. > > To resume with the deposition of your previous structure > ([Cu(CF3SO3)2(bpp)2]_response_250227.cif), please: > > 1. Go to > https://www.crystallography.net/cod/validate.php?CODSESSION=qovpepn705tjplflngrn3j5n5u > 2. Press 'Edit' and recheck/revalidate the structure. > 3. Continue normally with the rest of the deposition. > > Please let us know if you were successful in depositing your > structure or if you > ran into any additional problems. > > I apologise once again for any trouble this may have caused. > > Sincerely, > Antanas > > > > On Wed, 5 Mar 2025 at 08:51, ????? > wrote: > > Dear Sir/Madum, > > I'm Shin-ichiro Noro of Hokkaido University, Japan. > I tried to deposit my CIF file, > [Cu(CF3SO3)2(bpp)2]_response_250227.cif, > to COD for the first time. > When the CIF was deposited, the following error occurred. > > cif-deposit.pl : Can't create session: > Unable to connect to a repository at URL > 'svn://localhost/cod/cif/3/00/05': Can't connect to host > 'localhost': Connection refused > > Could you tell me how to treat this error? > > Best regards, > > Noro > > ------------------------------------------------------------- > ???????? > ?????????????????? > ????????????????? > 060-0810??????????10??5?? > Tel: 011-706-2272 > e-mail: noro at ees.hokudai.ac.jp > > Shin-ichiro Noro (Professor) > Group of Environmental Adaptation Science > Section of Integrated Environmental Science > Faculty of Environmental Earth Science > Hokkaido University > N10W5, Kita-ku, Sapporo 060-0810, Japan > Tel: +81-11-706-2272 > e-mail: noro at ees.hokudai.ac.jp > ------------------------------------------------------------- > > -- > This message has been scanned for viruses and > dangerous content by *MailScanner* > , and is > believed to be clean. > _______________________________________________ > Cod-bugs mailing list > Cod-bugs at lists.crystallography.net > http://lists.crystallography.net/cgi-bin/mailman/listinfo/cod-bugs > > > > -- > Antanas Vaitkus, > Vilnius University, > Life Sciences Center, > Institute of Biotechnology, > room C521, Saul?tekio al. 7, > LT-10257 Vilnius, Lithuania > > > > -- > This message has been scanned for viruses and > dangerous content by *MailScanner* , and is > believed to be clean. -- Dr. Saulius Gra?ulis Vilnius University Institute of Biotechnology, Saul?tekio al. 7 LT-10257 Vilnius, Lietuva (Lithuania) mobile: (+370-684)-49802, (+370-614)-36366 -- This message has been scanned for viruses and dangerous content by MailScanner, and is believed to be clean. -------------- next part -------------- An HTML attachment was scrubbed... URL: From noro at ees.hokudai.ac.jp Fri Mar 7 02:25:50 2025 From: noro at ees.hokudai.ac.jp (=?UTF-8?B?6YeO5ZGC55yf5LiA6YOO?=) Date: Fri, 7 Mar 2025 09:25:50 +0900 Subject: [Cod-bugs] error during CIF deposition In-Reply-To: References: Message-ID: Dear Antanas, I succeeded in depositing my structure! Thank you for your kind support. Best regards, Noro ------------------------------------------------------------- ????? ?? ????? ???????????? ???????? ???????? 060-0810 ?????????10??5?? Tel: 011-706-2272 e-mail: noro at ees.hokudai.ac.jp Shin-ichiro Noro (Professor) Group of Environmental Adaptation Science Section of Integrated Environmental Science Faculty of Environmental Earth Science Hokkaido University N10W5, Kita-ku, Sapporo 060-0810, Japan Tel: +81-11-706-2272 e-mail: noro at ees.hokudai.ac.jp ------------------------------------------------------------- 2025?3?6?(?) 16:58 Antanas Vaitkus : > Dear Noro, > > Saulius asked me to contact you with further instructions on how to > continue > with your data deposition. Unfortunately, our server was recently a bit > overwhelmed > by queries from crawler bots which resulted in a temporary unavailability > of our > deposition service. > > To resume with the deposition of your previous structure > ([Cu(CF3SO3)2(bpp)2]_response_250227.cif), please: > > 1. Go to > https://www.crystallography.net/cod/validate.php?CODSESSION=qovpepn705tjplflngrn3j5n5u > 2. Press 'Edit' and recheck/revalidate the structure. > 3. Continue normally with the rest of the deposition. > > Please let us know if you were successful in depositing your structure or > if you > ran into any additional problems. > > I apologise once again for any trouble this may have caused. > > Sincerely, > Antanas > > > > On Wed, 5 Mar 2025 at 08:51, ????? wrote: > >> Dear Sir/Madum, >> >> I'm Shin-ichiro Noro of Hokkaido University, Japan. >> I tried to deposit my CIF file, [Cu(CF3SO3)2(bpp)2]_response_250227.cif, >> to COD for the first time. >> When the CIF was deposited, the following error occurred. >> >> cif-deposit.pl: Can't create session: Unable to connect to a repository >> at URL >> 'svn://localhost/cod/cif/3/00/05': Can't connect to host 'localhost': >> Connection refused >> >> Could you tell me how to treat this error? >> >> Best regards, >> >> Noro >> >> ------------------------------------------------------------- >> ????? ?? >> ????? ???????????? >> ???????? ???????? >> 060-0810 ?????????10??5?? >> Tel: 011-706-2272 >> e-mail: noro at ees.hokudai.ac.jp >> >> Shin-ichiro Noro (Professor) >> Group of Environmental Adaptation Science >> Section of Integrated Environmental Science >> Faculty of Environmental Earth Science >> Hokkaido University >> N10W5, Kita-ku, Sapporo 060-0810, Japan >> Tel: +81-11-706-2272 >> e-mail: noro at ees.hokudai.ac.jp >> ------------------------------------------------------------- >> >> -- >> This message has been scanned for viruses and >> dangerous content by *MailScanner* , and >> is >> believed to be clean. _______________________________________________ >> Cod-bugs mailing list >> Cod-bugs at lists.crystallography.net >> http://lists.crystallography.net/cgi-bin/mailman/listinfo/cod-bugs >> > > > -- > Antanas Vaitkus, > Vilnius University, > Life Sciences Center, > Institute of Biotechnology, > room C521, Saul?tekio al. 7, > LT-10257 Vilnius, Lithuania > > > -- This message has been scanned for viruses and dangerous content by MailScanner, and is believed to be clean. -------------- next part -------------- An HTML attachment was scrubbed... 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