[Cod-bugs] Regarding the section "manage/release prepublications"

[Saulius Gražulis]

Dear Sakurabayashi,

it seems that we have found the reason why your reposition release did 
not work. The file "3000497.cif" is relatively large, about 34M, and it 
overflows our server memory. The reason for such size is a larger than 
usual SHELX data set (which is great! and understandable given the 
electron diffraction experiment).

If you do not mind, for a quick fix I will release the file manually 
(i.e. without using the Web site) and send you a COD link for 
confirmation that it looks as you intended. In future, we'll have to 
solve the problem with large files somehow.

Are you OK with such plan?

Sincerely yours,
Saulius


On 2025-04-22 08:43, sakurabayashi26 at sanken.osaka-u.ac.jp wrote:
>
> Dear Saulius,
>
> Thank you for your response.
>
> I tried accessing the release management page again, but it still does 
> not work on my end.
>
> I have attached the URL I was using as well as a screenshot of the 
> error page for your reference.
>
> COD:
>
> https://www.crystallography.net/cod/my_depositions.php?CODSESSION=e2gl6l2hv0o5dicj4bru8cr5s2&filter=prepublications 
> <https://www.crystallography.net/cod/my_depositions.php?CODSESSION=e2gl6l2hv0o5dicj4bru8cr5s2&filter=prepublications>
>
> Update page:
>
> https://www.crystallography.net/cod/edit.php?CODSESSION=lt8pnionim0obv2c72bug566nv&id=3000497&type=cif 
> <https://www.crystallography.net/cod/edit.php?CODSESSION=lt8pnionim0obv2c72bug566nv&id=3000497&type=cif>
>
> Best regards,
>
> Sakurabayashi
>
> *From:*Saulius Gražulis <grazulis at ibt.lt>
> *Sent:* Tuesday, April 22, 2025 2:24 PM
> *To:* sakurabayashi26 at sanken.osaka-u.ac.jp; cod-bugs at ibt.lt
> *Subject:* Re: [Cod-bugs] Regarding the section "manage/release 
> prepublications"
>
> Dear Sakurabayashi,
>
> I have checked the release management Web page, and it works for me at 
> the moment. We have recently experienced an increased activity of bots 
> that used to crash our server; it could be that you were also hit by 
> this incident. At the moment our software is fixed and the COD web 
> site seems to function as expected; may I ask you to try once more to 
> release your structure?
>
> If this still does not work, please send us the URL you were using and 
> a screen-shot with the error message/error page.
>
> Sincerely yours,
> Saulius
>
> On 2025-04-21 08:29, sakurabayashi26 at sanken.osaka-u.ac.jp wrote:
>
>     Dear COD team,
>
>     I am Shuhei Sakurabayashi in Osaka University, Japan.
>
>     I previously deposited a CIF file to the Crystallography Open
>     Database (COD ID: 3000497), and it is currently on hold for
>     prepublication.
>
>     Recently, the corresponding paper has been accepted for publication.
>
>     I would now like to update the entry to include the "Journal of
>     publication" information and make it publicly available.
>
>     However, when I try to access the update page, I encounter an
>     error (HTTP ERROR 500) and cannot proceed.
>
>     I would greatly appreciate it if you could advise me on how to
>     resolve this issue.
>
>     Thank you very much for your support.
>
>     Best regards,
>
>     Shuhei Sakurabayashi
>
>
>     -- 
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>
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>
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>
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>
> -- 
> Dr. Saulius Gražulis
> Vilnius University Institute of Biotechnology, Saulėtekio al. 7
> LT-10257 Vilnius, Lietuva (Lithuania)
> mobile: (+370-684)-49802, (+370-614)-36366
>
>
> -- 
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>
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-- 
Dr. Saulius Gražulis
Vilnius University Institute of Biotechnology, Saulėtekio al. 7
LT-10257 Vilnius, Lietuva (Lithuania)
mobile: (+370-684)-49802, (+370-614)-36366

-- 
This message has been scanned for viruses and
dangerous content by MailScanner, and is
believed to be clean.

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