From grazulis at ibt.lt  Mon Aug 11 09:24:13 2025
From: grazulis at ibt.lt (=?UTF-8?Q?Saulius_Gra=C5=BEulis?=)
Date: Mon, 11 Aug 2025 09:24:13 +0300
Subject: [Cod-bugs] Missing Journal Information
In-Reply-To: <LO0P265MB33230C8DFE9210871EF4067FBE29A@LO0P265MB3323.GBRP265.PROD.OUTLOOK.COM>
References: <LO0P265MB3323A6AFD231DE49A61A36A4BEAA2@LO0P265MB3323.GBRP265.PROD.OUTLOOK.COM>
 <70459c5f-188d-4400-a430-1c9e17c442d9@ibt.lt>
 <LO0P265MB3323DE4FA5D5F4B98BB07BF9BE43A@LO0P265MB3323.GBRP265.PROD.OUTLOOK.COM>
 <029fd080-1e94-4732-a2a6-2cec389c2104@ibt.lt>
 <CALHYoX4X0Wg__jo0UsAKLJFp6ic85ua63nMh4iBU55r=1S7DCA@mail.gmail.com>
 <LO0P265MB33238F05D74A3A7DDEA9EF02BE42A@LO0P265MB3323.GBRP265.PROD.OUTLOOK.COM>
 <567187b5-901f-4e14-8696-b81545b7646e@ibt.lt>
 <LO0P265MB33230AA196991DDE7B14D095BE51A@LO0P265MB3323.GBRP265.PROD.OUTLOOK.COM>
 <18ee432d-9996-417d-a35c-4d39ad538518@ibt.lt>
 <426e4000-56e2-4fde-8751-36e1ea11c209@ibt.lt>
 <LO0P265MB33230E9BB760261321313E25BE2DA@LO0P265MB3323.GBRP265.PROD.OUTLOOK.COM>
 <dc3c42fa-6ded-442c-ab1c-bfa3d634a756@ibt.lt>
 <LO0P265MB33232D93C924B5A92453652ABE2CA@LO0P265MB3323.GBRP265.PROD.OUTLOOK.COM>
 <16b90bac-3d4f-4fd3-8ed1-a891bb58256d@ibt.lt>
 <LO0P265MB33230C8DFE9210871EF4067FBE29A@LO0P265MB3323.GBRP265.PROD.OUTLOOK.COM>
Message-ID: <feaa9ee8-14d0-45b9-91ab-8c08be0fb386@ibt.lt>

On 2025-08-10 18:52, Robert McMeeking - STFC UKRI wrote:
>
> Hi Saulius
>
> Here are a list of ?recovered? article titles. It need a bit of work. 
> For instance there appear to be problems rendering Unicode character 
> after transfer from the linux server to my laptop.
>
Thank you very much!
>
> Will get back with further details later when I get to check things 
> out on Monday
>
OK, let me know how it goes. If possible, please include also DOI column 
for each COD ID (for cross-checks), and add the column headers.

Regards,
Saulius

> Regards
>
> Bob
>
> *From:*Saulius Gra?ulis <grazulis at ibt.lt>
> *Sent:* 07 August 2025 14:42
> *To:* McMeeking, Robert (STFC,DL,SC) <robert.mcmeeking at stfc.ac.uk>; 
> 'Antanas Vaitkus' <antanas.vaitkus90 at gmail.com>
> *Cc:* cod-bugs at ibt.lt
> *Subject:* Re: [Cod-bugs] Missing Journal Information
>
> On 2025-08-07 11:33, Robert McMeeking - STFC UKRI wrote:
>
>     I have done some tests on some of the entries with article title
>     issues. The ones I checked *do *appear to have titles. I will try
>     to get the corrections to you quite soon.
>
> We can find COD entries without titles in the COD SQL database. I can 
> send you a list of such entries or an SQL query if you would like.
>
>     I have notices problems with a number of the dois. My scripts
>     appear to have problems containing any if characters: <>()
>
> Lol ? I had exactly the same problem :).
>
> I think we need to us 'urlencode' for them before sending them to the 
> doi.org as a DOI request, it worked for me. I can send yo may shell 
> hack for this if that would help.
>
>     I can see how these characters might give problems in a Unix
>     environment. But I assume I should be able to fix the problems.
>     Having said that I am a bit surprised that these characters are
>     allowed in valid dois!
>
> Yes, DOIs are more permissive than even URLs. No idea why they did 
> that, but that's what we have. Let me know if you would like to look 
> at any of my hacks on this.
>
> Regards,
> Saulius
>
> PS. The 40k+ bibliographies for COD entries with missing years or page 
> numbers were downloaded. I'll have to look at them and sort them out 
> (some? have failed since the DOIs are not from journals but from 
> university repos, some journals no longer hand our page numbers or do 
> not include them into DOI-derived bibliography files...). We'll see 
> how it works but a lot of COD entries can be fixed now.
>
> S.G.
>
> -- 
> Dr. Saulius Gra?ulis
> Vilnius University Institute of Biotechnology, Saul?tekio al. 7
> LT-10257 Vilnius, Lietuva (Lithuania)
> mobile: (+370-684)-49802, (+370-614)-36366
>
>
> -- 
> This message has been scanned for viruses and
> dangerous content by *MailScanner* <http://www.mailscanner.info/>, and is
> believed to be clean.
>
>
> -- 
> This message has been scanned for viruses and
> dangerous content by *MailScanner* <http://www.mailscanner.info/>, and is
> believed to be clean. 


-- 
Dr. Saulius Gra?ulis
Vilnius University Institute of Biotechnology, Saul?tekio al. 7
LT-10257 Vilnius, Lietuva (Lithuania)
mobile: (+370-684)-49802, (+370-614)-36366

-- 
This message has been scanned for viruses and
dangerous content by MailScanner, and is
believed to be clean.

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.crystallography.net/pipermail/cod-bugs/attachments/20250811/faf80de0/attachment.htm>