From r.akiyoshi at kwansei.ac.jp Sat Aug 30 13:29:32 2025 From: r.akiyoshi at kwansei.ac.jp (AKIYOSHI RYOHEI) Date: Sat, 30 Aug 2025 10:29:32 +0000 Subject: [Cod-bugs] CIF File Submission for Deposition In-Reply-To: References: Message-ID: Dear COD Team, My name is Ryohei Akiyoshi, an Assistant Professor at Kwansei Gakuin University. I would like to submit a CIF file for deposition. When I attempted to upload it through the online deposition system, I encountered an error, likely due to the file size (approximately 14 MB). The alert message was: curl: (28) Failed to connect to www.crystallography.net port 443: Connection timed out Therefore, I am attaching the CIF file to this email, and I would greatly appreciate it if you could process the deposition on my behalf. Thank you very much for your kind assistance. Best regards, Ryohei ------------------------------------------- ?? ?? (Ryohei Akiyoshi) ?????? ??? ??? ?? ?669-1330 ???????????1? TEL: 079-565-7454 E-mail: r.akiyoshi at kwansei.ac.jp ------------------------------------------- -- This message has been scanned for viruses and dangerous content by MailScanner, and is believed to be clean. -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: KGF-79.zip Type: application/x-zip-compressed Size: 3169281 bytes Desc: KGF-79.zip URL: From grazulis at ibt.lt Sun Aug 31 09:00:52 2025 From: grazulis at ibt.lt (=?UTF-8?Q?Saulius_Gra=C5=BEulis?=) Date: Sun, 31 Aug 2025 09:00:52 +0300 Subject: [Cod-bugs] CIF File Submission for Deposition In-Reply-To: References: Message-ID: Dear Dr. Ryohei Thank you for the files and for depositing data to the COD. I regret that it did not work on the first time. I'll investigate the problem and will deposit your CIF into the COD. Sincerely yours, Saulius On 2025-08-30 13:29, AKIYOSHI RYOHEI wrote: > > Dear COD Team, > > My name is Ryohei Akiyoshi, an Assistant Professor at Kwansei Gakuin > University. > I would like to submit a CIF file for deposition. > > When I attempted to upload it through the online deposition system, I > encountered an error, likely due to the file size (approximately 14 MB). > > The alert message was: curl: (28) Failed to connect to > www.crystallography.net port 443: > Connection timed out > > Therefore, I am attaching the CIF file to this email, and I would > greatly appreciate it if you could process the deposition on my behalf. > > Thank you very much for your kind assistance. > > Best regards, > Ryohei > > ------------------------------------------- > > ?? ??(Ryohei Akiyoshi) > > ?????? ??? ??? ?? > > ?669-1330 ???????????1? > > TEL: 079-565-7454 > > E-mail: r.akiyoshi at kwansei.ac.jp > > ------------------------------------------- > > > -- > This message has been scanned for viruses and > dangerous content by *MailScanner* , and is > believed to be clean. > > _______________________________________________ > Cod-bugs mailing list > Cod-bugs at lists.crystallography.net > http://lists.crystallography.net/cgi-bin/mailman/listinfo/cod-bugs -- Dr. Saulius Gra?ulis Vilnius University Institute of Biotechnology, Saul?tekio al. 7 LT-10257 Vilnius, Lietuva (Lithuania) fax: (+370-5)-2234367 / phone (office): (+370-5)-2234353 mobile: (+370-684)-49802, (+370-614)-36366 -- This message has been scanned for viruses and dangerous content by MailScanner, and is believed to be clean. -------------- next part -------------- An HTML attachment was scrubbed... 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Name: grazulis.vcf Type: text/vcard Size: 4 bytes Desc: not available URL: From grazulis at ibt.lt Sun Aug 31 13:49:45 2025 From: grazulis at ibt.lt (=?UTF-8?Q?Saulius_Gra=C5=BEulis?=) Date: Sun, 31 Aug 2025 13:49:45 +0300 Subject: [Cod-bugs] CIF File Submission for Deposition In-Reply-To: References: Message-ID: <82cb0aff-11e3-4c0a-99a4-ae387dea1c2d@ibt.lt> On 2025-08-31 09:05, AKIYOSHI RYOHEI wrote: > > Thank you very much for your kind support and for taking care of > depositing my CIF into the COD. > As the manuscript is currently in the proof stage, I would greatly > appreciate it if the deposition could be completed at your earliest > convenience. > Dear Dr. Ryohei, I have submitted your structure under the COD ID 3000615: https://www.crystallography.net/cod/3000615.html https://www.crystallography.net/cod/3000615.html?CODSESSION=o9j9ggt2bcs506303e8cmmusju I have also changed the depositor ID in the database so that you should now see the structure under your deposition lists and you should be able to release it when the publication is out. Since the original CIF was large and contained both reflection data and the coordinates, I have split it into two files ? one with the structure model (atomic coordinates) and another with the Fobs and the measured intensity data, which is the standard practice to deposit Fobs datasets into the COD. In a follow-up mail, I'll describe some suggestions how Fobs data representation can be made more conveniently in the COD. As a follow-up question ?? do you also have links to the raw diffraction data (say, in the XRDa archive)? If so it would be very valuable to insert these data links into your deposited CIF. You can send me the record ID and I will insert the links for you, if you wish. Sincerely yours, Saulius -- Dr. Saulius Gra?ulis Vilnius University Institute of Biotechnology, Saul?tekio al. 7 LT-10257 Vilnius, Lietuva (Lithuania) fax: (+370-5)-2234367 / phone (office): (+370-5)-2234353 mobile: (+370-684)-49802, (+370-614)-36366 -- This message has been scanned for viruses and dangerous content by MailScanner, and is believed to be clean. -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: grazulis.vcf Type: text/vcard Size: 4 bytes Desc: not available URL: