[Cod-bugs] Micro-ED structures with high R_factors could not be deposited to COD as they are

Saulius Gražulis grazulis at ibt.lt
Tue Oct 7 09:23:59 EEST 2025


Dear Yusuke,

thank you for your e-mail and for the data deposition!

On 2025-10-06 14:53, ohnishi.yusuke.corefc at osaka-u.ac.jp wrote:
> We deposited 5 entries to COD (ID: 3000620~3000624).
> We had to comment out _refine_ls_R_factor_gt and 
> _refine_ls_wR_factor_ref items; otherwise the Web interface did not 
> accept the depositions.
> Could you please uncomment these lines on the server?
OK, I'll insert back the T factor data.
>
> They are MicroED structures refined only kinematically.
> Thus, traditional X-ray crystallography thresholds are not adequate.
>
Fair enough.

This looks like an important comment on your deposited structure. Is it 
OK if I insert these two sentences as "depositor comments" on your behalf?

Sincerely yours,
Saulius

-- 
Dr. Saulius Gražulis
Vilnius University Institute of Biotechnology, Saulėtekio al. 7
LT-10257 Vilnius, Lietuva (Lithuania)
mobile: (+370-684)-49802, (+370-614)-36366

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