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<div class="moz-cite-prefix">Dear Sakurabayashi,</div>
<div class="moz-cite-prefix"><br>
</div>
<div class="moz-cite-prefix">it seems that we have found the reason
why your reposition release did not work. The file "3000497.cif"
is relatively large, about 34M, and it overflows our server
memory. The reason for such size is a larger than usual SHELX data
set (which is great! and understandable given the electron
diffraction experiment).<br>
</div>
<div class="moz-cite-prefix"><br>
</div>
<div class="moz-cite-prefix">If you do not mind, for a quick fix I
will release the file manually (i.e. without using the Web site)
and send you a COD link for confirmation that it looks as you
intended. In future, we'll have to solve the problem with large
files somehow.</div>
<div class="moz-cite-prefix"><br>
</div>
<div class="moz-cite-prefix">Are you OK with such plan?<br>
</div>
<div class="moz-cite-prefix"><br>
</div>
<div class="moz-cite-prefix">Sincerely yours,<br>
Saulius<br>
</div>
<div class="moz-cite-prefix"><br>
</div>
<div class="moz-cite-prefix"><br>
</div>
<div class="moz-cite-prefix">On 2025-04-22 08:43,
<a class="moz-txt-link-abbreviated" href="mailto:sakurabayashi26@sanken.osaka-u.ac.jp">sakurabayashi26@sanken.osaka-u.ac.jp</a> wrote:<br>
</div>
<blockquote type="cite"
cite="mid:0c7901dbb349$734667a0$59d336e0$@sanken.osaka-u.ac.jp">
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<div class="WordSection1">
<p class="MsoNormal"><span style="font-size:11.0pt" lang="EN-US">Dear
Saulius,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt" lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt" lang="EN-US">Thank
you for your response.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt" lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt" lang="EN-US">I
tried accessing the release management page again, but it
still does not work on my end.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt" lang="EN-US">I
have attached the URL I was using as well as a screenshot of
the error page for your reference.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt" lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt" lang="EN-US">COD:<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt" lang="EN-US"><a
href="https://www.crystallography.net/cod/my_depositions.php?CODSESSION=e2gl6l2hv0o5dicj4bru8cr5s2&filter=prepublications"
moz-do-not-send="true">https://www.crystallography.net/cod/my_depositions.php?CODSESSION=e2gl6l2hv0o5dicj4bru8cr5s2&filter=prepublications</a><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt" lang="EN-US"><img
style="width:3.5729in;height:2.6875in" id="_x0000_i1026"
src="cid:part1.2qrhtbkQ.H60nKPFc@ibt.lt" class=""
width="343" height="258" border="0"></span><span
style="font-size:11.0pt" lang="EN-US"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt" lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt" lang="EN-US">Update
page:<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt" lang="EN-US"><a
href="https://www.crystallography.net/cod/edit.php?CODSESSION=lt8pnionim0obv2c72bug566nv&id=3000497&type=cif"
moz-do-not-send="true">https://www.crystallography.net/cod/edit.php?CODSESSION=lt8pnionim0obv2c72bug566nv&id=3000497&type=cif</a><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt" lang="EN-US"><img
style="width:3.3854in;height:2.0729in" id="図_x0020_1"
src="cid:part2.8y0N1mGP.1XXc3usj@ibt.lt" class=""
width="325" height="199" border="0"></span><span
style="font-size:11.0pt" lang="EN-US"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt" lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt" lang="EN-US">Best
regards,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt" lang="EN-US">Sakurabayashi<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt" lang="EN-US"><o:p> </o:p></span></p>
<div>
<div
style="border:none;border-top:solid #E1E1E1 1.0pt;padding:3.0pt 0mm 0mm 0mm">
<p class="MsoNormal" style="text-align:left" align="left"><b><span
style="font-size:11.0pt;font-family:"Calibri",sans-serif"
lang="EN-US">From:</span></b><span
style="font-size:11.0pt;font-family:"Calibri",sans-serif"
lang="EN-US"> Saulius Gražulis <a class="moz-txt-link-rfc2396E" href="mailto:grazulis@ibt.lt"><grazulis@ibt.lt></a> <br>
<b>Sent:</b> Tuesday, April 22, 2025 2:24 PM<br>
<b>To:</b> <a class="moz-txt-link-abbreviated" href="mailto:sakurabayashi26@sanken.osaka-u.ac.jp">sakurabayashi26@sanken.osaka-u.ac.jp</a>;
<a class="moz-txt-link-abbreviated" href="mailto:cod-bugs@ibt.lt">cod-bugs@ibt.lt</a><br>
<b>Subject:</b> Re: [Cod-bugs] Regarding the section
"manage/release prepublications"<o:p></o:p></span></p>
</div>
</div>
<p class="MsoNormal" style="text-align:left" align="left"><span
lang="EN-US"><o:p> </o:p></span></p>
<div>
<p class="MsoNormal" style="text-align:left" align="left"><span
lang="EN-US">Dear Sakurabayashi,</span><span
style="font-size:12.0pt" lang="EN-US"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span lang="EN-US"><o:p> </o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span lang="EN-US">I have checked the
release management Web page, and it works for me at the
moment. We have recently experienced an increased activity
of bots that used to crash our server; it could be that
you were also hit by this incident. At the moment our
software is fixed and the COD web site seems to function
as expected; may I ask you to try once more to release
your structure?<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span lang="EN-US"><o:p> </o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span lang="EN-US">If this still does not
work, please send us the URL you were using and a
screen-shot with the error message/error page.<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span lang="EN-US"><o:p> </o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span lang="EN-US">Sincerely yours,<br>
Saulius<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span lang="EN-US"><o:p> </o:p></span></p>
</div>
<div>
<p class="MsoNormal"><span lang="EN-US">On 2025-04-21 08:29, <a
href="mailto:sakurabayashi26@sanken.osaka-u.ac.jp"
moz-do-not-send="true" class="moz-txt-link-freetext">sakurabayashi26@sanken.osaka-u.ac.jp</a>
wrote:<o:p></o:p></span></p>
</div>
<blockquote style="margin-top:5.0pt;margin-bottom:5.0pt">
<p class="MsoNormal"><span style="font-size:11.0pt"
lang="EN-US">Dear COD team,</span><span lang="EN-US"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"
lang="EN-US"> </span><span lang="EN-US"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"
lang="EN-US">I am Shuhei Sakurabayashi in Osaka
University, Japan.</span><span lang="EN-US"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"
lang="EN-US"> </span><span lang="EN-US"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"
lang="EN-US">I previously deposited a CIF file to the
Crystallography Open Database (COD ID: 3000497), and it is
currently on hold for prepublication.</span><span
lang="EN-US"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"
lang="EN-US"> </span><span lang="EN-US"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"
lang="EN-US">Recently, the corresponding paper has been
accepted for publication.</span><span lang="EN-US"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"
lang="EN-US">I would now like to update the entry to
include the "Journal of publication" information and make
it publicly available. </span><span lang="EN-US"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"
lang="EN-US">However, when I try to access the update
page, I encounter an error (HTTP ERROR 500) and cannot
proceed.</span><span lang="EN-US"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"
lang="EN-US"> </span><span lang="EN-US"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"
lang="EN-US">I would greatly appreciate it if you could
advise me on how to resolve this issue.</span><span
lang="EN-US"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"
lang="EN-US"> </span><span lang="EN-US"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"
lang="EN-US">Thank you very much for your support.</span><span
lang="EN-US"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"
lang="EN-US"> </span><span lang="EN-US"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"
lang="EN-US">Best regards,</span><span lang="EN-US"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"
lang="EN-US">Shuhei Sakurabayashi</span><span lang="EN-US"><o:p></o:p></span></p>
<p class="MsoNormal" style="text-align:left" align="left"><span
style="font-size:12.0pt;font-family:"MS PGothic",sans-serif"
lang="EN-US"><br>
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<pre><span lang="EN-US">_______________________________________________<o:p></o:p></span></pre>
<pre><span lang="EN-US">Cod-bugs mailing list<o:p></o:p></span></pre>
<pre><span lang="EN-US"><a
href="mailto:Cod-bugs@lists.crystallography.net"
moz-do-not-send="true" class="moz-txt-link-freetext">Cod-bugs@lists.crystallography.net</a><o:p></o:p></span></pre>
<pre><span lang="EN-US"><a
href="http://lists.crystallography.net/cgi-bin/mailman/listinfo/cod-bugs"
moz-do-not-send="true" class="moz-txt-link-freetext">http://lists.crystallography.net/cgi-bin/mailman/listinfo/cod-bugs</a><o:p></o:p></span></pre>
</blockquote>
<p><span lang="EN-US"><o:p> </o:p></span></p>
<pre><span lang="EN-US">-- <o:p></o:p></span></pre>
<pre><span lang="EN-US">Dr. Saulius Gražulis<o:p></o:p></span></pre>
<pre><span lang="EN-US">Vilnius University Institute of Biotechnology, Saulėtekio al. 7<o:p></o:p></span></pre>
<pre><span lang="EN-US">LT-10257 Vilnius, Lietuva (Lithuania)<o:p></o:p></span></pre>
<pre><span lang="EN-US">mobile: (+370-684)-49802, (+370-614)-36366<o:p></o:p></span></pre>
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</blockquote>
<p><br>
</p>
<pre class="moz-signature" cols="72">--
Dr. Saulius Gražulis
Vilnius University Institute of Biotechnology, Saulėtekio al. 7
LT-10257 Vilnius, Lietuva (Lithuania)
mobile: (+370-684)-49802, (+370-614)-36366
</pre>
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