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<div class="moz-cite-prefix">On 2025-08-10 18:52, Robert McMeeking -
STFC UKRI wrote:<br>
</div>
<blockquote type="cite"
cite="mid:LO0P265MB33230C8DFE9210871EF4067FBE29A@LO0P265MB3323.GBRP265.PROD.OUTLOOK.COM">
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<p class="MsoNormal"><span
style="font-size:11.0pt;mso-fareast-language:EN-US">Hi
Saulius<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;mso-fareast-language:EN-US">Here are
a list of “recovered” article titles. It need a bit of work.
For instance there appear to be problems rendering Unicode
character after transfer from the linux server to my laptop.</span></p>
</div>
</blockquote>
Thank you very much!<br>
<blockquote type="cite"
cite="mid:LO0P265MB33230C8DFE9210871EF4067FBE29A@LO0P265MB3323.GBRP265.PROD.OUTLOOK.COM">
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<p class="MsoNormal"><span
style="font-size:11.0pt;mso-fareast-language:EN-US"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;mso-fareast-language:EN-US">Will get
back with further details later when I get to check things
out on Monday</span></p>
</div>
</blockquote>
<p>OK, let me know how it goes. If possible, please include also DOI
column for each COD ID (for cross-checks), and add the column
headers.</p>
<p>Regards,<br>
Saulius<br>
</p>
<blockquote type="cite"
cite="mid:LO0P265MB33230C8DFE9210871EF4067FBE29A@LO0P265MB3323.GBRP265.PROD.OUTLOOK.COM">
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<p class="MsoNormal"><span
style="font-size:11.0pt;mso-fareast-language:EN-US"><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;mso-fareast-language:EN-US">Regards<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;mso-fareast-language:EN-US">Bob<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<div>
<div
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<p class="MsoNormal"><b><span lang="EN-US"
style="font-size:11.0pt;font-family:"Calibri",sans-serif">From:</span></b><span
lang="EN-US"
style="font-size:11.0pt;font-family:"Calibri",sans-serif">
Saulius Gražulis <a class="moz-txt-link-rfc2396E" href="mailto:grazulis@ibt.lt"><grazulis@ibt.lt></a>
<br>
<b>Sent:</b> 07 August 2025 14:42<br>
<b>To:</b> McMeeking, Robert (STFC,DL,SC)
<a class="moz-txt-link-rfc2396E" href="mailto:robert.mcmeeking@stfc.ac.uk"><robert.mcmeeking@stfc.ac.uk></a>; 'Antanas Vaitkus'
<a class="moz-txt-link-rfc2396E" href="mailto:antanas.vaitkus90@gmail.com"><antanas.vaitkus90@gmail.com></a><br>
<b>Cc:</b> <a class="moz-txt-link-abbreviated" href="mailto:cod-bugs@ibt.lt">cod-bugs@ibt.lt</a><br>
<b>Subject:</b> Re: [Cod-bugs] Missing Journal
Information<o:p></o:p></span></p>
</div>
</div>
<p class="MsoNormal"><o:p> </o:p></p>
<div>
<p class="MsoNormal">On 2025-08-07 11:33, Robert McMeeking -
STFC UKRI wrote:<o:p></o:p></p>
</div>
<blockquote style="margin-top:5.0pt;margin-bottom:5.0pt">
<p class="MsoNormal"
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span
style="font-size:11.0pt;mso-fareast-language:EN-US">I have
done some tests on some of the entries with article title
issues. The ones I checked
<b>do </b>appear to have titles. I will try to get the
corrections to you quite soon.
</span><o:p></o:p></p>
</blockquote>
<p class="MsoNormal">We can find COD entries without titles in
the COD SQL database. I can send you a list of such entries or
an SQL query if you would like.<br>
<br>
<o:p></o:p></p>
<blockquote style="margin-top:5.0pt;margin-bottom:5.0pt">
<p class="MsoNormal"
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span
style="font-size:11.0pt;mso-fareast-language:EN-US"> </span><o:p></o:p></p>
<p class="MsoNormal"
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span
style="font-size:11.0pt;mso-fareast-language:EN-US">I have
notices problems with a number of the dois. My scripts
appear to have problems containing any if characters:
<>()</span><o:p></o:p></p>
</blockquote>
<p>Lol – I had exactly the same problem :).<o:p></o:p></p>
<p>I think we need to us 'urlencode' for them before sending
them to the doi.org as a DOI request, it worked for me. I can
send yo may shell hack for this if that would help.<o:p></o:p></p>
<blockquote style="margin-top:5.0pt;margin-bottom:5.0pt">
<p class="MsoNormal"
style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span
style="font-size:11.0pt;mso-fareast-language:EN-US">I can
see how these characters might give problems in a Unix
environment. But I assume I should be able to fix the
problems. Having said that I am a bit surprised that these
characters are allowed in valid dois!</span><o:p></o:p></p>
</blockquote>
<p>Yes, DOIs are more permissive than even URLs. No idea why
they did that, but that's what we have. Let me know if you
would like to look at any of my hacks on this.<o:p></o:p></p>
<p>Regards,<br>
Saulius<o:p></o:p></p>
<p>PS. The 40k+ bibliographies for COD entries with missing
years or page numbers were downloaded. I'll have to look at
them and sort them out (some have failed since the DOIs are
not from journals but from university repos, some journals no
longer hand our page numbers or do not include them into
DOI-derived bibliography files...). We'll see how it works but
a lot of COD entries can be fixed now.<o:p></o:p></p>
<p>S.G.<o:p></o:p></p>
<pre>-- <o:p></o:p></pre>
<pre>Dr. Saulius Gražulis<o:p></o:p></pre>
<pre>Vilnius University Institute of Biotechnology, Saulėtekio al. 7<o:p></o:p></pre>
<pre>LT-10257 Vilnius, Lietuva (Lithuania)<o:p></o:p></pre>
<pre>mobile: (+370-684)-49802, (+370-614)-36366<o:p></o:p></pre>
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<pre class="moz-signature" cols="72">--
Dr. Saulius Gražulis
Vilnius University Institute of Biotechnology, Saulėtekio al. 7
LT-10257 Vilnius, Lietuva (Lithuania)
mobile: (+370-684)-49802, (+370-614)-36366
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