[Cod-bugs] "No data blocks that contain coordinates found"

[Antanas Vaitkus]

Dear Amanda,

am I correct to assume that You are trying to deposit a protein crystal
structure? The scope of the COD does not include biopolymers since this
domain is already well covered by the PDB database.

Is there any reason not to deposit your crystal structure to the PDB
database?

Sincerely,
Antanas Vaitkus

2017-10-03 14:13 GMT+03:00 Amanda Constantinides <
aconstantinides1 at student.gsu.edu>:

> Hi Antanas,
> I can not send any data. It is not published yet. I have a regular PDB
> file, an .mtz file, a log file (.lp), and a .sca file. What is the best way
> to convert them to .cif format to be uploaded into the COD? My attempt
> using PDB_extract was not successful.
>
> Thank you,
>
> Amanda Constantinides
> ------------------------------
> *From:* Antanas Vaitkus <antanas.vaitkus90 at gmail.com>
> *Sent:* Monday, October 2, 2017 3:12:36 PM
> *To:* Amanda Constantinides
> *Cc:* cod-bugs at ibt.lt
> *Subject:* Re: [Cod-bugs] "No data blocks that contain coordinates found"
>
> Dear Amanda Constantinides,
>
> thank you for taking interest in the COD. Could you please send an example
> of the CIF files you are trying to upload so we could investigate further?
>
> Sincerely,
> Antanas Vaitkus
>
> 2017-10-02 20:30 GMT+03:00 Amanda Constantinides <
> aconstantinides1 at student.gsu.edu>:
>
>> Hi,
>>
>> I am trying to deposit several structures in the COD in preparation for
>> publication in *Crystals*. I used PDB_extract to convert structure
>> factor and coordinate files to .CIF format. When I tried to upload either
>> of these compressed CIF files, the error message "no data blocks that
>> contain coordinates found" came up. When I tried to add diffraction data
>> files (.mtz files with .lp files converted to .cif files in PDB_extract),
>> new error messages came up.
>>
>> How can I deposit these structures?
>>
>> Thank you,
>>
>> Amanda Constantinides
>> Graduate Research Assistant
>> Georgia State University
>>
>>
>>
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>>
>>
>
>
> --
> Antanas Vaitkus,
> PhD student at Vilnius University Institute of Biotechnology,
> room V325, Saulėtekio al. 7
> <https://maps.google.com/?q=Saul%C4%97tekio+al.+7&entry=gmail&source=g>,
> LT-10257 Vilnius, Lithuania
>
>
>


-- 
Antanas Vaitkus,
PhD student at Vilnius University Institute of Biotechnology,
room V325, Saulėtekio al. 7,
LT-10257 Vilnius, Lithuania
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