[Cod-bugs] We cannot connect to COD

ohnishi.yusuke.corefc at osaka-u.ac.jp ohnishi.yusuke.corefc at osaka-u.ac.jp
Thu Dec 25 06:43:55 EET 2025


Dear Dr. Saulius,

this is Ohnishi, who previously inquired about the deposition.
If it still looks like it will take some time to restore the COD, could you please manually perform the deposition for the attached file?
Please let me know if any information is missing.

I apologize for the inconvenience, but I would appreciate your assistance.

All the best,
Ohnishi


大西 裕介 (Ohnishi Yusuke)

The University of Osaka
Core Facility Center
Specially Appointed Assistant Professor
I-405, 8-1 Mihogaoka, Ibaraki, Osaka 567-0047, Japan
Tel: 06-6879-4815
Email: ohnishi.yusuke.corefc at osaka-u.ac.jp<mailto:ohnishi.yusuke.corefc at osaka-u.ac.jp>


________________________________
差出人: 大西 裕介 <ohnishi.yusuke.corefc at osaka-u.ac.jp>
送信日時: 2025年12月17日 9:40
宛先: Saulius Gražulis <grazulis at ibt.lt>; cod-bugs at lists.crystallography.net <cod-bugs at lists.crystallography.net>
件名: Re: [Cod-bugs] We cannot connect to COD

Dear Dr. Saulius

thank you for your reply.
I apologize for taking up your time while you're busy with the recovery.
I will upload the data after the recovery is complete.

Best regards,
Ohnishi


大西 裕介 (Ohnishi Yusuke)

The University of Osaka
Core Facility Center
Specially Appointed Assistant Professor
I-405, 8-1 Mihogaoka, Ibaraki, Osaka 567-0047, Japan
Tel: 06-6879-4815
Email: ohnishi.yusuke.corefc at osaka-u.ac.jp<mailto:ohnishi.yusuke.corefc at osaka-u.ac.jp>

________________________________
差出人: Saulius Gražulis <grazulis at ibt.lt>
送信日時: 2025年12月16日 16:23
宛先: 大西 裕介 <ohnishi.yusuke.corefc at osaka-u.ac.jp>; cod-bugs at lists.crystallography.net <cod-bugs at lists.crystallography.net>
件名: Re: [Cod-bugs] We cannot connect to COD

Dear Ohnishi,

thank you for your e-mail. You are right, we experienced a server overload and a subsequent disk crash related to a large number of simultaneous bot requests. We are now busy restoring the COD server and loading data from backups, which, unfortunately, might take a couple of days.

If the deposition is urgent please sent you files to us via e-mail and I will handle them manually.

I apologise for this inconvenience.

Sincerely yours,
Saulius


On 2025-12-16 02:49, ohnishi.yusuke.corefc at osaka-u.ac.jp<mailto:ohnishi.yusuke.corefc at osaka-u.ac.jp> wrote:
Dear COD support,

I am Yusuke Ohnishi at the University of Osaka, Japan.

I haven't been able to connect to the COD website since last Friday.
Is there some kind of trouble going on?

I have a file I would like to deposit to COD.
If it takes a while to resolve, I'd like to deposit it via email if possible.

I apologize for the trouble, but I appreciate your help.

Best regards,
Ohnishi



大西 裕介 (Ohnishi Yusuke)

The University of Osaka
Core Facility Center
Specially Appointed Assistant Professor
I-405, 8-1 Mihogaoka, Ibaraki, Osaka 567-0047, Japan
Tel: 06-6879-4815
Email: ohnishi.yusuke.corefc at osaka-u.ac.jp<mailto:ohnishi.yusuke.corefc at osaka-u.ac.jp>



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Dr. Saulius Gražulis
Vilnius University Institute of Biotechnology, Saulėtekio al. 7
LT-10257 Vilnius, Lietuva (Lithuania)
mobile: (+370-684)-49802, (+370-614)-36366


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